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MeTRiD 2019
Sat 6 - Thu 11 April 2019
Prague, Czech Republic
co-located with
ETAPS 2019
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Venue: Orea Hotel Pyramida
Venue: Charles University
Venue: Stará zbrojnice
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ETAPS 2019
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Charles University
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Room information: S9
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Charles University
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S9
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Sat 6 Apr
Displayed time zone:
Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna
change
09:00 - 10:30
I
HSB
at
S9
Chair(s):
Milan Ceska
Brno University of Technology
09:00
10m
Day opening
Opening
HSB
09:10
60m
Talk
Invited talk: Modelling and personalisation techniques for behavioural prediction and emotion recognition
HSB
Marta Kwiatkowska
University of Oxford
10:10
10m
Short-paper
Poster flash: Comprehensive Modelling Platform
HSB
Matej Troják
Masaryk University
,
David Safranek
Masaryk University
,
Jan Červený
Global Change Research Institute CAS
,
Marek Havlík
Masaryk University
,
Lukrécia Mertová
Masaryk University
,
Matej Hajnal
Masaryk University
,
Jakub Hrabec
Masaryk University
,
Jakub Šalagovič
Masaryk University
10:20
10m
Short-paper
Poster flash: Formalizing metabolic-regulatory networks by hybrid automata
HSB
Lin Liu
Freie Universität Berlin
,
Alexander Bockmayr
Freie Universität Berlin
11:00 - 12:30
Modelling
HSB
at
S9
Chair(s):
Tatjana Petrov
Universität Konstanz
11:00
30m
Talk
A Hybrid HMM Approach for the Dynamics of DNA Methylation
HSB
Charalampos Kyriakopoulos
Saarland University
,
Pascal Giehr
Saarland University
,
Alexander Lück
Saarland University
,
Jörn Walter
Saarland University
,
Verena Wolf
Saarland University
11:30
30m
Talk
Controlling noisy expression through auto regulation of burst frequency and protein stability
HSB
Pavol Bokes
Comenius University
,
Abhyudai Singh
University of Delaware
12:00
30m
Talk
Using a hybrid approach to model central carbon metabolism across the cell cycle
HSB
Cecile Moulin
Laboratoire de Recherche en Informatique, Université Paris-Saclay & UMR CNRS 8623
,
Laurent Tournier
MaIAGE, INRA, Université Paris-Saclay.
,
Sabine Peres
Laboratoire de Recherche en Informatique, Université Paris-Saclay & UMR CNRS 8623.
14:00 - 15:30
Oded Maler memorial (1)
HSB
at
S9
Chair(s):
Nicola Paoletti
Royal Holloway, University of London, UK
14:00
60m
Talk
Oded Maler: An odyssey from Computer Science to Biological Sciences
HSB
Thao Dang
CNRS/VERIMAG
16:00 - 18:00
Oded Maler memorial (2)
HSB
at
S9
Chair(s):
Nicola Paoletti
Royal Holloway, University of London, UK
16:00
60m
Talk
From Sensitive to Formal Barbaric Systems Biology
HSB
Alexandre Donze
University of California, Berkeley
17:00
60m
Talk
Timed Patterns: from Definition to Matching and Monitoring, a survey in memoriam Oded Maler
HSB
Eugene Asarin
IRIF, University Paris Diderot and CNRS, France
Sun 7 Apr
Displayed time zone:
Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna
change
09:00 - 10:30
V
HSB
at
S9
Chair(s):
Nicola Paoletti
Royal Holloway, University of London, UK
09:00
60m
Talk
Invited talk: Closed-loop neurohybrid interfaces: from in vitro to in vivo studies and beyond
HSB
Michela Chiappalone
Italian Institute of Technology
10:00
30m
Talk
Temporal Logic Based Synthesis of Experimentally Constrained Interaction Networks
HSB
Judah Goldfeder
Yeshiva University
,
Hillel Kugler
Microsoft
11:00 - 12:30
Analysis
HSB
at
S9
Chair(s):
Jerome Feret
INRIA Paris
11:00
30m
Talk
Fixed-point Computation of Equilibria in Biochemical Regulatory Networks
HSB
Isabel Cristina Perez-Verona
IMT Institute for Advanced Studies Lucca, Italy
,
Mirco Tribastone
IMT Institute for Advanced Studies Lucca, Italy
,
Max Tschaikowski
IMT Institute for Advanced Studies Lucca, Italy
11:30
30m
Talk
Rejection-Based Simulation of Stochastic Spreading Processes on Complex Networks
HSB
Gerrit Großmann
Saarland University
,
Verena Wolf
Saarland University
12:00
30m
Talk
rPrism -- A software for reactive weighted state transition models
HSB
Daniel Figueiredo
University of Aveiro
,
Eugénio A. M. Rocha
University of Aveiro
,
Madalena Chaves
INRIA
,
Manuel A. Martins
University of Aveiro
14:00 - 15:30
VII
HSB
at
S9
Chair(s):
David Safranek
Masaryk University
14:00
60m
Talk
Invited talk: Reaction networks, stability of steady states, motifs for oscillatory dynamics, and parameter estimation in complex biochemical mechanisms
HSB
Igor Schreiber
University of Chemistry and Technology of Prague
15:00
30m
Talk
Geometric fluid approximation for general continuous-time Markov chains
HSB
Michalis Michaelides
University of Edinburgh
,
Jane Hillston
University of Edinburgh
,
Guido Sanguinetti
University of Edinburgh
16:00 - 18:00
Synthesis and Inference
HSB
at
S9
Chair(s):
Michela Chiappalone
Italian Institute of Technology
16:00
30m
Talk
Extracting landscape features from single particle trajectories
HSB
Ádám Halász
West Virginia University
,
Ouri Maler
West Virginia University
,
Jeremy S Edwards
University of New Mexico
16:30
30m
Talk
Fuzzy Matching in Symbolic Systems Biology
HSB
Adrian Riesco
Universidad Complutense de Madrid
,
Beatriz Santos-Buitrago
Seoul National University
,
Merrill Knapp
SRI International
,
Gustavo Santos-Garcia
Universidad de Salamanca
,
Carolyn Talcott
SRI International
17:00
30m
Talk
Data-informed parameter synthesis for population Markov chains
HSB
Matej Hajnal
Masaryk University
,
Tatjana Petrov
Universität Konstanz
,
David Safranek
Masaryk University
,
Morgane Nouvian
University of Konstanz
17:30
10m
Day closing
Closing
HSB
Sat 6 Apr
Displayed time zone:
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S9
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Modelling
HSB
Oded Maler memorial (1)
HSB
Oded Maler memorial (2)
Sun 7 Apr
Displayed time zone:
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S9
HSB
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HSB
Analysis
HSB
VII
HSB
Synthesis and Inference
Sat 6 Apr
Displayed time zone:
Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna
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15
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10:00
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15:00
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16:00
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17:00
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S9
HSB
Opening
09:00 - 09:10
HSB
Invited talk: Modelling and personalisation techniques for behavioural ...
09:10 - 10:10
HSB
Poster flash: Comprehensive Modelling Platform
10:10 - 10:20
HSB
Poster flash: Formalizing metabolic-regulatory networks by hybrid automata
10:20 - 10:30
HSB
A Hybrid HMM Approach for the Dynamics of DNA Methylation
11:00 - 11:30
HSB
Controlling noisy expression through auto regulation of burst frequency ...
11:30 - 12:00
HSB
Using a hybrid approach to model central carbon metabolism across the c ...
12:00 - 12:30
HSB
Oded Maler: An odyssey from Computer Science to Biological Sciences
14:00 - 15:00
HSB
From Sensitive to Formal Barbaric Systems Biology
16:00 - 17:00
HSB
Timed Patterns: from Definition to Matching and Monitoring, a survey in ...
17:00 - 18:00
Sun 7 Apr
Displayed time zone:
Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna
change
Room
9:00
15
30
45
10:00
15
30
45
11:00
15
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45
12:00
15
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13:00
15
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14:00
15
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45
15:00
15
30
45
16:00
15
30
45
17:00
15
30
45
S9
HSB
Invited talk: Closed-loop neurohybrid interfaces: from in vitro to in v ...
09:00 - 10:00
HSB
Temporal Logic Based Synthesis of Experimentally Constrained Interactio ...
10:00 - 10:30
HSB
Fixed-point Computation of Equilibria in Biochemical Regulatory Networks
11:00 - 11:30
HSB
Rejection-Based Simulation of Stochastic Spreading Processes on Complex ...
11:30 - 12:00
HSB
rPrism -- A software for reactive weighted state transition models
12:00 - 12:30
HSB
Invited talk: Reaction networks, stability of steady states, motifs for ...
14:00 - 15:00
HSB
Geometric fluid approximation for general continuous-time Markov chains
15:00 - 15:30
HSB
Extracting landscape features from single particle trajectories
16:00 - 16:30
HSB
Fuzzy Matching in Symbolic Systems Biology
16:30 - 17:00
HSB
Data-informed parameter synthesis for population Markov chains
17:00 - 17:30
HSB
Closing
17:30 - 17:40
x
Mon 25 Nov 00:59